Using #INNODB with MySQL So what I did so if anyone reads this in the future. I exported my SQL (Export Tab) from my database in PHPMyADMIN and then open it with my Notepad++ or just regular notepad works, but takes longer to load. I did a search for MyISAM and replaced all with INNODB. I then imported  (Import Tab) and overwrote my tables in PHPMYADMIN. Then I did as Alex mentioned above adding the last section to my (my.cnf in my case) Mysql file and this is my end result. Alot of my changes I borrowed from others Configs here that worked great for them: 

performance-schema=0
log-error=/var/log/mysqld.log
pid-file=/var/run/mysqld/mysqld.pid
innodb_stats_on_metadata = off
innodb_buffer_pool_instances = 4
innodb_buffer_pool_size=134217728
transaction_isolation = READ-COMMITTED
lock_wait_timeout = 4
innodb_lock_wait_timeout = 4
innodb_rollback_on_timeout = 1
binlog_format = MIXED
innodb_log_file_size = 400M
max_allowed_packet=268435456
open_files_limit=10000
default-storage-engine=INNODB
innodb_file_per_table=1
key_buffer_size = 64M
#max_allowed_packet = 16M
thread_stack = 192K
thread_cache_size = 192
max_connections = 250
table_open_cache = 100000
max_heap_table_size = 128M
tmp_table_size = 1024M
query_cache_limit = 2M
query_cache_size = 32M
query_cache_type = on

(This section I added especially for Froala in the past. So before you install Froala I would recommend this. Mine was already installed so I had to run a script to convert it. Took me a lot of Google searching)
collation-server = utf8mb4_unicode_ci
init-connect='SET NAMES utf8mb4'
character-set-server=utf8mb4

If you have any other things I can trey with this MySQL CNF for better performance please share :)